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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: DUOX1_CANLF
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFCLALTWT FLVGSWTSMG AQKPISWEVQ RFDGWYNNLM EHKWGSKGSR LQRLVPASYA  60
   61 DGVYQPLGEP HLPNPRDLSN AAMRGPAGQA SLRNRTVLGV FFGYHVLSDL VSVETPGCPA 120
  121 EFLNIRIPPG DPVFDPNGRG DVVLPFQRSR WDPESGQSPS NPRDLTNAVT GWLDGSAIYG 180
  181 SSHSWSDALR SFSGGQLASG PDPAFPRNAQ PPLLMWSAPD PASGQRGPGG LYAFGAERGN 240
  241 RDPFLQALGL LWFRYHNLCA QRLARQHPHW GDEELFQHAR KRVIATYQNI ALYEWLPSFL 300
  301 QQAPVKYAGY NPFLDPSISP EFLVASEQFF STMVPPGIYM RNASCHFQEV INRNSSISRA 360
  361 LRVCNSYWSR KHPNLRRAED VDALLLGMAS QIAEREDHVV VEDVLDFWPG SLKFSRTDHV 420
  421 AGCLQRGRDL GLPSYTKARA ALGLPPITRW QDINPALSQN NHTVLEATAA LYNQDLSQLE 480
  481 LLPGGLLESH GDPGPLFSAI VLNQFVRLRD GDRYWFENTR NGLFSEEEIA EIRNTSLRDV 540
  541 LVAVTNMNPS TLQPNVFFWH MGDPCPQPRQ LSTQGLPACA PSTMQDYFEG SGFGFGVTIG 600
  601 TLCCFPLVSL LSAWIVARLR KKNFKKLQGQ DRKSVMSEKL VGGMEALEWQ GHKEPCRPVL 660
  661 VHLQPGQICV VDGRLSVLRT IQLRPPQQVN LILSGNRGRR ALLLKIPKEY DLVLLFNLEE 720
  721 ERQVLVENLR GALKESGLKF QEWELREQEL MRTAVTRQQR SHLLETFFRH LFSQVLDIDQ 780
  781 ADAGTLPLDS SQKVQEALTC ELSRAEFAES LGLKPQDMFV ESMFSLADKD GNGYLSFREF 840
  841 LDILVVFMKG SPEEKSRLMF RMYDFDGNGL ISKDEFIRML RSFIEISNNC LSKAQLTEVV 900
  901 ESMFRESGFQ DKEELTWEDF HFMLRDHDSE LRFTQLCVRG VEVPEVIKDL CRRASYISQE 960
  961 KICPSPRVSA RCPHSNTEVE WTPQRLQCPV DTDPPQEIRR RFGKKVTSFQ PLLFTEAQRE1020
 1021 KFQRSRRHQT LQQFKRFIEN YRRHIGCVAV FYAITGGLFL ERAYYYAFGA HHMGITDTTR1080
 1081 VGIILSRGTA ASISFMFSYI LLTMCRNLIT FLRETFLNRY VPFDAAVDFH RLIASTAIVL1140
 1141 TVLHSAGHVV NVYLFSISPL SVLSCLFPGL FHNDGSEFPQ KYYWWFFQTV PGLTGVMLLL1200
 1201 VLAIMYVFAS HHFRRHSFRG FWLTHHLYIL LYVLLIIHGS FGLIQLPRFH IFFLVPALIY1260
 1261 VGDKLVSLSR KKVEISVVKA ELLPSGVTHL QFQRPQGFEY KSGQWVQIAC LALGTTEYHP1320
 1321 FTLTSAPHED TLSLHIRAAG PWTTRLREIY SPPTGDGCAK YPKLYLDGPF GEGHQEWHKF1380
 1381 EVSVLVGGGI GVTPFASILK DLVFKSSVSC QVFCKKIYFI WVTRTQRQFE WLADIIREVE1440
 1441 ENDCQDLVSV HIYITQLAEK FDLRTTMLYI CERHFQKVLN RSLFTGLRSI THFGRPPFEP1500
 1501 FFKSLQEVHP QVRKIGVFSC GPPGMTKNVE KACQLINRQD RTHFSHHYEN F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle