YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50978806, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARRPAVGL VLLLLCPAQV FAQSCVWYGE CGIASGDKRY NCQYSGPPKP LPKDGYDLMQ  60
   61 ELCPGLFFDN VSVCCDVQQL RTLKDSLQLP LQFLSRCPSC FYNLMNLFCE LTCSPRQSQF 120
  121 LNVTETEDYV DPVTNQTKTN VKELQYYVGE SFANAMYNAC RDVEAPSSND KALGLLCGKE 180
  181 AEACNATNWI EYMFNKDNGQ APFTIIPIFS DLPAHGMKPM NNATKGCDEP VDEVTAPCSC 240
  241 QDCSVVCGPK PQPPPAPAPW RILGLDAMYV IMWITYMAFL LMFFGAFFAV WCYRKRYFVS 300
  301 EYTPIDSNIA FSVNAGDTGE ASCCDALGAA FEGCLRRLFT QWGSFCIRNP GCIIFFSLAF 360
  361 IAACSSGLVF SRVTTNPVDL WSAPGSQARL EKEYFDAHFG PFFRTEQLII QAPHTSVHTY 420
  421 QPYPSGSDVP FGPPLDIGIL HQVLDLQTAI ENITATYNNE TVTLQDICVA PLSPYNKNCT 480
  481 IMSVLNYFQN SHSMLDHKIG DDFYVYADYH THLLYCVRAP ASLNDTSLLH DPCLGTFGGP 540
  541 VFPWLVLGGY DDQNYNNATA LVITFPVNNY YNDTEKLQRA QAWEKEFINF VKNYENPNLT 600
  601 ISFTTERSIE DELNRESNGD VFTVLISYAV MFLYISIALG HIKSCSRFLV DSKISLGIAG 660
  661 ILIVLSSVMC SLGIFSYFGI PLTLIVIEVI PFLVLAVGVD NIFILVQTYQ RDERLQGETL 720
  721 EQQLGRVLGE VAPSMFLSSF SEAVAFFLGA LSQMPAVHTF SLFAGMAVLI DFLLQITCFV 780
  781 SLLGLDLKRQ EKNRLDVLCC LTGSEGGTGI QASESCLFRF FKNSYSPFLL KDWMRPIVIA 840
  841 VFVGILSFSI AVLNKVEIGL DQSLSMPDDS YMMDYFKSLK YLHAGPPVYF VLEEGHDYTS 900
  901 LEGQNMVCGG MGCNNDSLVQ QIFSAAQLDN YTHIGFAPSS WIDDYFDWVK PQSSCCRVYN 960
  961 STDQFCNASV VDPACVRCRP LTQEGKRRPQ GEDFMRFLPM FLSDNPNPKC GKGGHAAYGS1020
 1021 AVNLVGNDTS VGATYFMTYH TVLQTSADFT DAMRKAILIA SNITKTMSLK GSHYRVFPYS1080
 1081 VFYVFYEQYL TIIDDTIFNL SVSLGAIFLV TLVLLGCELW SAVIMCVTIA MILVNMFGVM1140
 1141 WLWGISLNAV SLVNLVMSCG ISVEFCSHIT RAFTVSAKGS RVERAEEALS HMGSSVFSGI1200
 1201 TLTKFGGIVV LAFAKSQIFQ VFITGMYLAM VLLGATHGLI FLPVLLSYIG PSINKAKSLA1260
 1261 SQERYKGTER EQLLNF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle