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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CADH1_BOVIN
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPWSRSLSA LCCCCRCNPW LCREPEPCIP GFGAESYTFT VPRRNLERGR VLGRVSFEGC  60
   61 AGLPRTVYVS DDTRFKVHTD GVLTVRRPVH LHRPELSFLV HAWDSTHRKL STKVTLEVSA 120
  121 HHHHHHSHHD SPSGTQTEVL TFPGPHHGLR RQKRDWVIPP ISCPENEKGP FPKSLVQIKS 180
  181 NKEKETQVFY SITGQRADTP PVGVFIIERE TGWLKVTQPL DREQIAKYIL FSHAVSSNGQ 240
  241 AIEEPMEIVI TVTDQNDNKP QFTQEVFKAS ALEGALPGTS VMQVTATDID DEVNTYTAAI 300
  301 GYTIPAQDPM LPHNKMFTIN KETGVISVLT TGLDRESFPT YTLMVQAADL NGEGLSTTAT 360
  361 AVITVLDTND NAPRFNPTTY VGSVPENEAN VAITTLTVTD ADDPNTPAWE AVYTVLNDNE 420
  421 KQFIVVTDPV TNEGTLKTAK GLDFEAKQQY ILYVAVTNVA PFEVTLPTST ATVTVDVIDV 480
  481 NEAPIFVPPQ KRVEVPEDFG VGLEITSYTA REPDTFMEQK ITYRIWRDTA NWLEINPETG 540
  541 AISTRAELDR EDVDHVKNST YTALIIATDN GSPPATGTGT LLLFLDDVND NGPVPEPRTM 600
  601 DFCQRNPEPH IININDPDLP PNTSPFTAEL THGASVNWTI EYNDQERESL ILKPKKTLEL 660
  661 GDHKINLKLI DNQNKDQVTT LDVHVCDCDG IVSNCRKARP AEAGLQVPAI LGILGGILAF 720
  721 LILILLLLLL VRRRRVVKEP LLPPEDDTRD NVYYYDEEGG GEEDQDFDLS QLHRGLDARP 780
  781 EVTRNDVAPT LMSVPQYRPR PANPDEIGNF IDENLKAADS DPTAPPYDSL LVFDYEGSGS 840
  841 EAATLSSLNS SESDQDQDYD YLNEWGNRFK KLADMYGGGE DD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle