YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST48_PIG
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGAAARAW SLLWLLLPLL GLVGASGPRT LVLLDNLNLR ETHSLFFRSL KDRGFVLTFK  60
   61 TADDPSLSLI KYGEFLYDNL IVFSPSVEDF GGNINVETIS TFIDGGGSVL VAASSDIGDP 120
  121 LRELGSECGI EFDEEKTAVI DHHNYDVSDL AQHTLIVADT ENLLKAPTIV GKSSLNPILF 180
  181 RGVGMVADPD NPLVLDILTG SSTSYSFFPD KPITQYPHAV GKNTLLIAGL QARNNARVIF 240
  241 SGSLDFFSDA FFNSAVQKAT PGSQRYPQTG NYELAVALSR WVFKEEGVLR VGPVSHHRVG 300
  301 EKAPPNAYTV TDLVEYSIVI EQLSEGRWVP FDGDDIQLEF VRIDPFVRTF LKRKGGKYSV 360
  361 QFKFPDVYGV FQFKVDYNRL GYTHLYSSTQ VSVRPLQHTQ YERFIPSAYP YYASAFSMMV 420
  421 GLFIFSVVFL HMKEKEKSD

Type	Start	End	Confidence
Signal Peptide	1	25	0.98
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	407	0.99
Transmembrane Helix	408	430	0.92
Cytoplasmic	431	439	0.90