YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47522994, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTEGRSRTD LALPEPQRPS SASEIELSEV PLHENVLQEE DTPPPPRRTW LTFLKKELEF  60
   61 LGVTQILVGL ICLYFGTIVC SMLNISEFKE DFFSSFKAGY PFWGAALFAI SGFLSVMSEE 120
  121 KQAIYLLRGM LGANTISSIA AGVGTVILII NLKKSSSYAS NCRNIYENDF CSTASFSTEI 180
  181 VATILFLTIL GFCSAVLLTI YGVREILERN KIPEDRLYEE VNIYSPIYSE LEERKEIASA 240
  241 PDS

Type	Start	End	Confidence
Cytoplasmic	1	59	0.98
Transmembrane Helix	60	83	0.86
Non-Cytoplasmic	84	98	0.85
Transmembrane Helix	99	117	0.95
Cytoplasmic	118	128	0.78
Transmembrane Helix	129	150	0.93
Non-Cytoplasmic	151	179	0.96
Transmembrane Helix	180	203	0.90
Cytoplasmic	204	243	0.99