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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45220004, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARPPPAPT ARALLLALAG ALLAPRAARG VNLGSQFVPS MQQAGTRDGA GAYEVVSVSL  60
   61 LNGDPWNPMK TADSENHPGV LNFRIQLTSK ELIVNLERNE GLIASSFTET HYLQDGTDIS 120
  121 LIRNYTGHCY YHGRVQGSFG SAVSLSTCSG LRGLITFENN TYILEPMKNA TNRYKLFPVE 180
  181 NLPGTWGSCG SNTSGLTLHD RLPLASQTQT RRQKRETLKM TKYVELVIVA DNREFQRQGK 240
  241 DLEKVKQRLI EIANHVDKFY RPLNIRIVLV GVEVWNDIDK CSISQDPFTS LHEFLDWRKM 300
  301 KLLPRKSHDN AQLISGVYFQ GTTVGMAPIM SMCTAEQSGG IVMDHSDSPL GAAVTLAHEL 360
  361 GHNFGMNHDT LERGCSCKTA ADKGGCIMNP STGFPFPMMF SSCSRKDLEA SLQKGMGMCL 420
  421 FNLPEVKQSF GGQKCGNGYV EEGEECDCGE PEECQNLCCN ATTCALKPDA VCAHGLCCEN 480
  481 CRLKPAGTAC RDPSNACDLP EFCTGASPHC PANVYLHDGH PCQGVDGYCY NGICQTHEQQ 540
  541 CVTLWGPGAK PAPGICFERV NSAGDPYGNC GKDSKSSFAK CAMRDAKCGK IQCQGGASRP 600
  601 VIGTNAVSIE TNIPLQEGGR ILCRGTHVYL GDDLPDPGLV LAGTKCADGK ICLNRRCQNV 660
  661 SVFGVHECAV QCHGRGVCNN RKNCHCEPHW APPFCDRFGF GGSTDSGPVR QADNQGLTIG 720
  721 ILVTILCLLA AGCVVYLKRK TLIRLLFTDK KNTIEKLRCV RPPRPPRGSQ PGQAHLTHLS 780
  781 KGPTRKPPPS STPKDNTRRV PPCQHVDISR PLKAPDAPWP SSPQRGLPPL HQAPRVPCVP 840
  841 ARPLPANPAL RQAQGTRKPS PPQKPLPADP LSKTARLAGA PARSPGRQES ALRLAPIRPA 900
  901 PKQPHPVPRP APIAYAK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle