YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45382457, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSEDEKQKH TVDGNTYEIA NSNQDQDPED EKKGKKKKGK KPQMVSPLAL FRYSSCTDKL  60
   61 LMIFGSLLAI AHGTSLPIAM IIFGDMTDSF VTSGMTNITG NSSGLNSSAD VFNKLEEEMT 120
  121 RYAYYYSAIA AAVLVAAYIQ TSFWTLAAGR QVKKIREKFF HAIMRQEIGW FDVNDAGELN 180
  181 TRLIDDVSKI NEGIGDKIGF LIQSETTFLT GFIVGFIRGW KLTLVILAVS PVLGLSAALW 240
  241 AKILTAFTDK EQAAYAKAGA VAEEVLSAVR TVIAFGGQEK EIKRYHKNLE DAKRIGIRKA 300
  301 ITSNISMGAA FLLIYASYAL AFWYGTTLIL ANEYSIGNVL TVFFSVLIGA FSIGQTAPSI 360
  361 EAFANARGAA YAIFNIIDNE PEIDSYSDAG HKPDHIKGNL EFQNVFFNYP SRPDVEILKG 420
  421 LNLKVNCGQT VALVGGSGCG KSTTVQLIQR FYDPKEGTIT IDGQDLKSLN VRYLREIIGV 480
  481 VNQEPVLFAT TIAENIRYGR EDVTMEEIER ATKEANAYDF IMKLPKKFET VVGERGAQMS 540
  541 GGQKQRIAIA RALVHNPKIL LLDEATSALD TESESVVQAA LDKAREGRTT VVVAHRLSTV 600
  601 RNADLIAVFE SGVITEQGNH SQLIEKKGIY YKLVNMQTIE TEDPSSEKSE NAVSVKRSGS 660
  661 QSNLDESLKK ELRRGSTRRS MKKPGEPNDT DEKGSSPDEE LPPVSFLKLM KLNKNEWPYF 720
  721 VAGTFCAIVN GALQPAFSVI FSEIIGIFSE TDQKVLREKS NLYSLLFLAL GIISFFTFFV 780
  781 QGFAFGKAGE ILTMKLRFMA FKAMLRQDMA WFDDPKNSTG ALTTRLANDA SQVKGATGVR 840
  841 LALIAQNIAN LGTGIIISLV YGWQLTLLLL AVVPIIAVAG MIEMKMLAGH AKKDKIELEA 900
  901 AGKIATEAIE NIRTVASLTR EKRFELMYGE HLLVPYRNSV KKAHIFGFCF SLSQAMMFFT 960
  961 YAGCFRFGAY LVVNGHIEYK TVFLVFSAVV FGAMALGQTS SFAPDYAKAK ISAAHLFVLF1020
 1021 NRVPPIDSYR EDGEKPEKFG GNTRIKDVKF NYPNRPEVKI LQGLNLAVEK GETLALVGSS1080
 1081 GCGKSTVVQL LERFYDPLSG EIVFDDIDAK TLNIQWLRSH IGIVSQEPIL FDFTIAENIA1140
 1141 YGDNSREVSH EEIISAAKAA SIHSFIDSLP EKYNTRVGDK GTQLSGGQKQ RIAIARALIR1200
 1201 KPQILLLDEA TSALDTESEK IVQEALDKAR EGRTCIVIAH RLSTIQNADK IAVIQNGKVI1260
 1261 EQGTHQQLLA EKGFYYSLVN VQSGSCNM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle