YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45382249, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARRRDASA CKYCWGALMV LWRTALAKSI VLDPIYWNSS NPKFLPGQGL VLYPQIGDKL  60
   61 DIICPKVDSK TVGQYEYYKV YMVDKDQADS CAIRKDNTPL LNCAKPDQDV KFTIKFQEFS 120
  121 PNLWGLEFQK NKDYYVISTS NGSLEGLNNQ EGGVCQTKTM KILMKVGQDP NSAGLPRSTD 180
  181 PTKRPEQEAG TNGKSSTTSP FVKDHSGSST DGSKAGHSSI LGSEVALFAG IASGCIIFIV 240
  241 IIITLVVLLL KYRRRHRKHS PQHTTTLSLS TLATPKRSGN NNGSEPSDII IPLRTADSVF 300
  301 CPHYEKVSGD YGHPVYIVQE MPPQSPANIY YKV

Type	Start	End	Confidence
Signal Peptide	1	27	0.92
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	225	0.99
Transmembrane Helix	226	250	0.93
Cytoplasmic	251	333	0.99