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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VPP1_CHICK
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELFRSEEM TLAQLFLQSE AAYCCVSELG ELGKVQFRDL NPDVNVFQRK FVNEVRRCEE  60
   61 MDRKLRFVEK EIKKANIPIM DTGENPEVPF PRDMIDLEAN FEKIENELKE INTNQEALKR 120
  121 NFLELTELKF ILRKTQQFFD EMADPDLLEE SSSLLEPSEM GRGAPLRLGF VAGVINRERI 180
  181 PTFERMLWRV CRGNVFLRQA EIENPLEDPV TGDYVHKSVF IIFFQGDQLK NRVKKICEGF 240
  241 RASLYPCPET PQERKEMASG VNTRIDDLQM VLNQTEDHRQ RVLQAAAKNI RVWFIKVRKM 300
  301 KAIYHTLNLC NIDVTQKCLS AEVWCPVADL DSIQFALRRG TEHSGSTVPS ILNRMQTNQT 360
  361 PPTYNKTNKF TCGFQNIVDA YGIGTYREIN PAPYTIITFP FLFAVMFGDF GHGILMTLIA 420
  421 IWMVLRESRI LSQKSDNEMF STVFSGRYII LLMGLFSTYT GLIYNDCFSK SLNMFGSSWS 480
  481 VRPMFSKANW SDELLKTTPL LQLDPAEAGV FGGPYPFGID PIWNIANNKL AFLNSFKMKM 540
  541 SVILGIIHML FGVMLSLLNH IYFKKPLNIY LGFIPEMIFM SSLFGYLVIL IFYKWTAYDA 600
  601 HTSKEAPSPL IHFINMFLFS YGDTSNKMLY RGQKGIQCFL VVVALLCVPW MLVAKPLVLR 660
  661 HQYLRRKHLG THNFGGIRVG NGPTEEDAEI IQHDQLSTHS EEGEEPTEDE VFDFADTVVY 720
  721 QAIHTIEYCL GCISNTASYL RLWALSLAHA QLSEVLWTMV IHTGLSVRSL AGGFGLVFIF 780
  781 AAFATLTVAI LLVMEGLSAF LHALRLHWIE FQNKFYTGTG FKFLPFSFDP IREGKFDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle