YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMHS_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKLLPAQEA ARIYHTNYVR NARAMGVLWA LFTLCFSILM VVTFIQPYWI GDSIDTPQAG  60
   61 YFGLFSYCIG NALTGELICK GSPLDFGTIP SSAFKTAMFF VGISTFLIIG SILCFSLFFF 120
  121 CNAATVYKVC AWMQLAAATG LMIGCLIYPD GWDSSEVKRM CGDKTDKYTL GACTVRWAYI 180
  181 LCIIGILDAL ILSFLAFVLG NRQDNLLPSD FKVESKEEGN E

Type	Start	End	Confidence
Cytoplasmic	1	25	0.92
Transmembrane Helix	26	48	0.89
Non-Cytoplasmic	49	58	0.85
Transmembrane Helix	59	79	0.75
Cytoplasmic	80	96	0.72
Transmembrane Helix	97	120	0.92
Non-Cytoplasmic	121	129	0.65
Transmembrane Helix	130	152	0.87
Cytoplasmic	153	176	0.75
Transmembrane Helix	177	199	0.92
Non-Cytoplasmic	200	221	0.79