YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SURF4_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQNDIMSTA EDFADQFLRV TKQYLPHVAR LCLISTFLED GIRMWFQWSE QRDYIDGTWN  60
   61 CGYFLASIFV FINLFGQLSG CILVLSRNFV QYACFGLFGI IALQTIAYSI LWDLKFLMRN 120
  121 LALGGGLLLL LAESRSEGKS MFAGVPTMRE SSPKQYMQLG GRVLLVLMFM TLLHFDMNFF 180
  181 YILQNIVGTA LIILVAIGFK TKLAALTLVI WLFGINIYFN AFWTIPAYKP MHDFLKYDFF 240
  241 QTMSVIGGLL LVVALGPGGV SMDEKKKEW

Type	Start	End	Confidence
Cytoplasmic	1	26	0.71
Transmembrane Helix	27	46	0.44
Non-Cytoplasmic	47	60	0.62
Transmembrane Helix	61	84	0.82
Cytoplasmic	85	88	0.60
Transmembrane Helix	89	111	0.87
Non-Cytoplasmic	112	115	0.63
Transmembrane Helix	116	134	0.69
Cytoplasmic	135	155	0.85
Transmembrane Helix	156	175	0.84
Non-Cytoplasmic	176	179	0.84
Transmembrane Helix	180	199	0.93
Cytoplasmic	200	206	0.76
Transmembrane Helix	207	227	0.90
Non-Cytoplasmic	228	238	0.91
Transmembrane Helix	239	261	0.90
Cytoplasmic	262	269	0.93