YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TBX20_CHICK
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYTPPPKPQ LSSRANAFSI AALMSSGSSK DKEAAESTIK PLEQFVEKSS CAQPLSDLSG  60
   61 LEPHGDFSGS PSALCTEPLI PTTPIIPSEE MAKISCSLET KELWDKFHEL GTEMIITKSG 120
  121 RRMFPTIRVS FSGVDPEAKY IVLMDIVPVD NKRYRYAYHR SSWLVAGKAD PPLPARLYVH 180
  181 PDSPFTGEQL MKQMVSFEKV KLTNNELDQH GHIILNSMHK YQPRVHIIKK KDHTASLLNL 240
  241 KSEEFRTFIF PETVFTAVTA YQNQLITKLK IDSNPFAKGF RDSSRLTDIE RESVESLIQK 300
  301 HSYARSPIRT YGGEDDLGDD SQATQSRGSA FTTSDNLSLS SWVSSSTSFP GFQHPQSLSA 360
  361 LGTSTASIAT PIPHPIQGSL PPYSRLGMPL TPSAIASSMQ GTGPTFPSFH MPRYHHYFQQ 420
  421 GPYAAIQGLR HSSAVMTPFV

Type	Start	End	Confidence
Signal Peptide	1	29	0.56
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	440	0.98