YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45383846, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWCDRGVQM LLTTVGAFAA FSLMAIAIGT DYWLYSSAHI CNGTNITTDD TQGPPKKARG  60
   61 DLTHSGLWRI CCLEGIYKGH CFRINHFPED NDYDHDSSEY LLRIVRASSV FPILSTILLL 120
  121 LGGLCVGAGR IYNSKNNIIL SAGILFVAAG LSNIIGIIVY ISSNAGDPSD KRDEDKKNHY 180
  181 NYGWSFYFGA LSFIVAETIG VLAVNIYIEK NKELRFKTKR EFLKTSSSSP YARMPSYRYR 240
  241 RRRSRSSSRS TEPSPSRDIS PVGMKIASTI PMNEISMYTL SREPLKVTTA ASYNADQEAS 300
  301 FLQVHNFLQK EFKEGLHVNM VNRRTTPV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.87
Transmembrane Helix	10	29	0.94
Non-Cytoplasmic	30	109	0.95
Transmembrane Helix	110	129	0.94
Cytoplasmic	130	137	0.79
Transmembrane Helix	138	161	0.90
Non-Cytoplasmic	162	186	0.94
Transmembrane Helix	187	208	0.94
Cytoplasmic	209	328	0.98