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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27807461, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLGPAFGL LLLLFCPAQV FSQSCIWYGE CGIASGDKRY NCRYSGPPEP LPQDGYDLVQ  60
   61 ELCPGFFFGN VSLCCDVQQL HTLKDNLQLP LQFLSRCPSC FYNLVNLFCE LTCSPRQSQF 120
  121 LNVTATEDYV DPATNQTKTN VKELQYYVGE SFANAMYNSC RDVEAPSSNE KALGLLCGRE 180
  181 ASACNATNWI EYMFNKDNGQ APFTITPVFS DLPTHGMEPM NNATKGCDES VDEVTGPCSC 240
  241 QDCSAVCGPK PQPPPPPVPW KILGLDAMYV IMWSTYMAFL LVFFGAFFAV WCYRKRYFVS 300
  301 EFTPIDGNIP FSINASDKGG PTCCDPLGAA FEAHLRRLFE WWGSFCVRHP GCVVFFSVAF 360
  361 IAACSSGLVF IQVTTDPVDL WSAPGSQARL EKEYFDTHFG PFFRTEQLII RAPHTPPHIY 420
  421 EPYPSGADVP FGPPLAVNIL HQVLDLQTAI ESITASYNNE TVTLRDICVA PLSPYNQNCT 480
  481 ILSVLNYFQN SHSVLDHQVG DDFFVYADYH THFLYWVRAP ASLNDTSLLH DPCLGTFGGP 540
  541 VFPWLVLGGY DDQNYNNATA LVITFPVNNY YNDTEKLQRA QAWEKEFINF VQNYENPNLT 600
  601 ISFKAERSIE DELNRESNSD VFTVLISYGV MFLYISIALG HIKSCRRLLV DSKILLGIAG 660
  661 VLIVLSPVAC SLGFFSYWGS PLTLIVIEVI PFLVLAVGVD NIFILVQTYQ IDERLQGETL 720
  721 DQQVGRVLGE VAPSMFLSSF AETVAFFLGG LSVMPAVHTF SLFAGMAVLI DFLLQITCFV 780
  781 SLLGLDIKRQ EKNQLDVLCC VGGAADDAGI QASESCLFRF FRNSYAPLLL KDWMRPLVVA 840
  841 VFVGVLSFSI AVLNKVEIGL DQSLSMPDDS YVTDYFQSLN QYLHAGPPVY FVLEEGHDYT 900
  901 STKGQNMVCG GLGCNNDSLV QQVFTAAQLD SYTRIGFAPS SWIDDYFDWV KPQSSCCRIY 960
  961 NSTEQFCNAS VVNPTCVRCR PLTPEGKQRP QGADFMRFLP MFLSDNPNPK CGKGGHAAYS1020
 1021 AAVNILDNGT RVGATYFMTY HTVLQTSADF IDAMEKARLI ASNITRTMNQ QGGDHRVFPY1080
 1081 SVFYVFYEQY LTMIDDTIFN LSVSLGAIFL VAVVLLGCEL WSAVIMCATI AMILVNMFGV1140
 1141 MWLWGISLNA VSLVNLVMSC GISVEFCSHI TRAFTVSTKG SRVERAEEAL SHMGSSVFSG1200
 1201 ITLTKFGGII VLAFAKSQIF QIFYFRMYLA MVLLGATHGL IFLPVLLSYI GPSINKAKSL1260
 1261 TTQQRYRGTE REQLLNF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle