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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27806135, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFLLPRGT SSFRRFTRES LAAIEKRMAE KQARSSAASQ ESRDGLPEEE APRPQLDLQA  60
   61 SKKLPDLYGN PPRELIGEPL EDLDPFYSTQ KTFIVLNKGK TIFRFSATNA LHVLSPFHPI 120
  121 RRVAVKILVH SLFSMLIMCT ILTNCVFMAQ HDPPPWTKYV EYIFTAIYTF ESLVKILARG 180
  181 FCLHAFTFLR DPWNWLDFSV IIMAYTTEFV DLGNVSALRT FRVLRALKTI SVISGLKTIV 240
  241 GALIQSVKKL ADVMVLTVFC LSVFALIGLQ LFMGNLRHKC VRNFTVLNGT NSTNASVEAD 300
  301 GLIWASLDDY LNDPENYLLK NGTSDVLLCG NSSDAGTCPE GYRCLKAGGN PDHGYTSFDS 360
  361 FAWAFLALFR LMTQDCWERL YQQTLRSAGK IYMIFFMLVI FLGSFYLVNL ILAVVAMAYE 420
  421 EQNQATIAET EEKEKRFQEA MELLKKEQEA LAIRGVDTVS RSSLEMSPLA PVTTHERRSK 480
  481 RRKRMSSGME ECGDDKFPKS DSEDGPRAVN RFSITHGLSR TSMKPRSSHG SIFTFRRRDL 540
  541 GSETDFADDE NSTAGDSESH RTSLLVPWPL RRPSTLGQPS PGTSTPGHVL NGKRNSTVDC 600
  601 NGVVSLLGAG DPEATSPGSH LLHPMKLERP PDTTTPSEEP GRPQTLTPQA PCVDGFEEPG 660
  661 ERQRALSAVS VLTSALEELE ESQRRCPPCW IRFAQHYLIW ECCPLWMSIK QKVKFMVMDP 720
  721 FADLTITMCI VLNTLFMALE HYNMTTEFEE MLQVGNLVFT GIFTAEMTFK IIALDPYYYF 780
  781 QQGWNIFDSI IVILSLMELG LSRMGNLSVL RSFCLLRVFK LAKSWPTLNT LIKIIGNSVG 840
  841 ALGNLTLVLA IIVFIFAVVG MQLFGKNYSE QRHRISDSGL LPRWHMMDFF HAFLIIFRIL 900
  901 CGEWIETMWD CMEVSGQSLC LLVFLLVMVI GNLVVLNLFL ALLLSSFSAD NLTAPDEDGE 960
  961 MNNLQLALAR IQRGLRFIKR TTWDFCCVLL QRPPQKPAAL ASQGQLPGCI ATSSPPPQPE1020
 1021 SEKAPPARKE TRFEEGQRPG QGAPGDAEPV CVPIAVAESD TDDPEEDEEN SLSTEEESSK1080
 1081 QQESQLASGS PEALPEPRVW SQVSETTSSG AEASEVQADL RQQRRAEAPA PGCSELPEDS1140
 1141 YSEGSTADMT NTADLLEQIP DLGEDVKDPE DCFTEGCVRR CPCCTVDTTQ AHGKVWWRLR1200
 1201 KTCYRIVEHS WFETFIIFMI LLSSGALAFE DIYLEERKTI KVLLEYADKM FTYVFVLEML1260
 1261 LKWVAYGFKK YFTNAWCWLD FLIVDVLLIS LVANALGFAE MGPIKSLRTL RALRPLRALS1320
 1321 RFEGMRVVVN ALVGAIPSIM NVLLVCLIFW LIFSIMGVNL FAGKFGRCIN QTEGDLPLNY1380
 1381 TIVNNKSDCE SFNVTGELYW TKVKVNFDNV GAGYLALLQV ATFKGWMDIM YAAVDSRGYE1440
 1441 EQPQWEYNLY MYIYFVIFII FGSFFTLNLF IGVIIDNFNQ QKKKLGGQDI FMTEEQKKYY1500
 1501 NAMKKLGSKK PQKPIPRPLN KYQGFIFDIV TKQAFDVTIM FLICLNMVTM MVETDDQSPE1560
 1561 KVNILAKINL LFVGIFTAEC IFKMVALRHY YFTNSWNIFD FVVVILSIVG TVLSDIIQKY1620
 1621 FFSPTLFRVI RLARISRILR LIRGAKGIRT LLFALMMSLP ALFNIGLLLF LVMFIYSIFG1680
 1681 MANFAYVKWE AGIDDMFNFQ TFANSMLCLF QITTSAGWDG LLSPILNTGP PYCDPNLPNS1740
 1741 NGSRGNCGSP AVGILFFTTY IIISFLIVVN MYIAIILENF SVATEESTEP LSEDDFDMFY1800
 1801 EIWEKFDPEA TQFIEYLALS DFADALSEPL RIPKPNQISL INMDLPMVSG DRIHCMDILF1860
 1861 AFTKRVLGES GEMDALKIQM EEKFMAANPS KISYEPITTT LRRKHEEVSA TIIQRAFRRH1920
 1921 LLQRSVKHAS FLYRQQAGSS GLSEEDAPEQ EGLIAYMMNE NFSRRPGPPS SSSVSSTSFP1980
 1981 PSYDSVTRAT SDNPQVRASD YSPSEDLADF PPTPDRDRES IV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle