YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUND2_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSTQRTGS HLAQTAAARH SASSRGEAAR VSSRDELAEM AAASQGNFEG KFESLDLAEL  60
   61 AKKQPWWRTL FGQESGPSAE KYSVATQLLI GGVTGWCTGF IFQKVGKLAA TAVGGGFFLL 120
  121 QLANHTGYIK VDWQRVEKDM KKAKEQLKIR KSNQIPTEVK SKAEEVVSFV KKNVLVTGGF 180
  181 FGGFLLGMAS

Type	Start	End	Confidence
Cytoplasmic	1	83	0.63
Transmembrane Helix	84	102	0.46
Non-Cytoplasmic	103	108	0.67
Transmembrane Helix	109	128	0.47
Cytoplasmic	129	168	0.63
Transmembrane Helix	169	188	0.46
Non-Cytoplasmic	189	190	0.68