YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19070896, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELALDPGDH DLLGFLLEES GGLGAAPDEA LTSPPDWELP LSESLSDWDV EDFLSCLPSP  60
   61 PAVLNVFSNS DPCLVQHDHT YSLSQEHVSI DLDNESYEKE RAQMTPLRVE EPADQEIARL 120
  121 ILTEEEKRLL EKEGLTLPGM LPLTKMEEQV LKRVRRKIRN KKSAQESRRK KKVYVGGLES 180
  181 RVLKYTAQNL ELQNKVQLLE EQNLSLLDQL RRLQAMVIQT ANKASSSSTC VLVLLFSFCL 240
  241 LLVPAMYSSD TRGSLPAEHR VLSRQLRALP SEDPPQLEPP ALQSEVPKDS LNPELQAASN 300
  301 SCCLFHLMPQ APRAEPPLQL PLPDGFSGCS CPDSISPLHA NLTREEGWLP TPSPTSVILQ 360
  361 GRYSG

Type	Start	End	Confidence
Cytoplasmic	1	225	0.58
Transmembrane Helix	226	247	0.67
Non-Cytoplasmic	248	365	0.83