YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57524619, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAERFGRT CVVAIVLLAT VLQVTGNEES QLIADKFKNY SKNIRPARHA DEKVKVQVKL  60
   61 TLTNLISLNE KEETLTTNVW IEIQWHDYRL AWNTSEYHDI EQIRVPYYTV WLPDIVLENN 120
  121 IDGKFDVAYY ANVLISYDGS MYWLPPAIYR STCAIEITYF PFDWQNCTLV FRSQTYSANE 180
  181 IDIVLAEDEN GKPIEWVDID PEAFTENGEW AIKHRPARKL TNQRYSPDDL EYQEVYYNII 240
  241 IQRKPLFYVI NIILPCSLIS SLVVLAYFLP AKAGGQKLTV SISVLLAQTV FLILISQKIP 300
  301 ETSLSVPLIG KYLIFVMSMT TLIVTNCIL

Type	Start	End	Confidence
Signal Peptide	1	26	0.92
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	246	0.96
Transmembrane Helix	247	269	0.94
Cytoplasmic	270	277	0.83
Transmembrane Helix	278	297	0.92
Non-Cytoplasmic	298	307	0.74
Transmembrane Helix	308	328	0.86
Cytoplasmic	329	329	0.89