YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57524577, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENWSLISLC VLLGLTSRWA VSFHSYSGAG KPPMFGDYEA QRHWQELTYN LPVHEWYFNT  60
   61 TNNDLNYWGL DYPPLTAYHS LACAYIAKLF NPEWVELHAS RGYESHSHKL FMRATVLFAD 120
  121 ALIYIPAVLL YCFYFCDGSP KQKVATAFCI LMYPGLMLID YGHFQYNGVS LGLALWGVLG 180
  181 LGLGWDLFGS VAFVLALNYK QMELYHALPF FCYLLGKCVK HGLNGQG

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	113	0.96
Transmembrane Helix	114	135	0.92
Cytoplasmic	136	143	0.87
Transmembrane Helix	144	164	0.92
Non-Cytoplasmic	165	172	0.85
Transmembrane Helix	173	197	0.89
Cytoplasmic	198	227	0.85