YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CNIF1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVAMKLPS FPNAISIGHR SFSRVRCSSS LSVCSAAAAS SATISTDSES VSLGHRVRKD  60
   61 FRILHQEVNG SKLVYLDSAA TSQKPAAVLD ALQNYYEFYN SNVHRGIHYL SAKATDEFEL 120
  121 ARKKVARFIN ASDSREIVFT RNATEAINLV AYSWGLSNLK PGDEVILTVA EHHSCIVPWQ 180
  181 IVSQKTGAVL KFVTLNEDEV PDINKLRELI SPKTKLVAVH HVSNVLASSL PIEEIVVWAH 240
  241 DVGAKVLVDA CQSVPHMVVD VQKLNADFLV ASSHKMCGPT GIGFLYGKSD LLHSMPPFLG 300
  301 GGEMISDVFL DHSTYAEPPS RFEAGTPAIG EAIALGAAVD YLSGIGMPKI HEYEVEIGKY 360
  361 LYEKLSSLPD VRIYGPRPSE SVHRGALCSF NVEGLHPTDL ATFLDQQHGV AIRSGHHCAQ 420
  421 PLHRYLGVNA SARASLYFYN TKDDVDAFIV ALADTVSFFN SFK

Type	Start	End	Confidence
Signal Peptide	1	42	0.91
N-region	1	33
H-region	34	39
C-region	40	42
Cleavage Site	42	43
Non-Cytoplasmic	43	463	0.99