YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HHP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQNGHNDEA ETVSCGNGNC KSKIVPGDDH GGDESSGTKR RKKRKTQQKT MKRRELMSYC  60
   61 ELPEYMKDNE YILNYYRADW SIRDAFFSVF SFHNESLNVW THLIGFIFFV ALTVANIIHH 120
  121 DGFFPVDAKS PGNVTRWPFF VFLGGSMFCL LASSICHLFC CHSKELNVFL LRIDYAGITA 180
  181 MIITSFFPPI FYIFQCTPRW YFIYLAGITS MGIFTIITLF TPSLSAPKYR AFRALLFASM 240
  241 GLFGIVPAAH ALVVNWGNPQ RNVTLVYELL MAVFYLVGTG FYVGRVPERL KPGWFDRVGH 300
  301 SHQIFHVFVL LGALSHYAAA LLFLDWRDHV GC

Type	Start	End	Confidence
Cytoplasmic	1	98	0.99
Transmembrane Helix	99	119	0.95
Non-Cytoplasmic	120	138	0.92
Transmembrane Helix	139	161	0.94
Cytoplasmic	162	170	0.89
Transmembrane Helix	171	193	0.90
Non-Cytoplasmic	194	200	0.84
Transmembrane Helix	201	221	0.96
Cytoplasmic	222	231	0.81
Transmembrane Helix	232	254	0.90
Non-Cytoplasmic	255	263	0.91
Transmembrane Helix	264	284	0.94
Cytoplasmic	285	303	0.89
Transmembrane Helix	304	324	0.91
Non-Cytoplasmic	325	332	0.93