YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SBH1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMGFAVSDE LLGTVAPIVV YWLYSGIYVA LSSLESYRLH SKVEEEEKNL VSKSSVVKGV  60
   61 LVQQVVQAVV AILLFTVTGS DAEADKAQQF SFLVLARQFV TAMIVLDTWQ YFMHRYMHQN 120
  121 KFLYKHIHSQ HHRLIVPYAY GALYNHPVEG LLLDTIGGAL SFLVSGMSPR TSIFFFSFAT 180
  181 IKTVDDHCGL WLPGNLFHMV FKNNSAYHDI HHQLYGTKYN FSQPFFVMWD RILGTYMPYS 240
  241 LEKREDGGFE ARPTKEFKDD

Type	Start	End	Confidence
Cytoplasmic	1	10	0.46
Transmembrane Helix	11	31	0.83
Non-Cytoplasmic	32	59	0.47
Transmembrane Helix	60	79	0.58
Cytoplasmic	80	92	0.41
Transmembrane Helix	93	113	0.67
Non-Cytoplasmic	114	149	0.58
Transmembrane Helix	150	168	0.53
Cytoplasmic	169	260	0.66