YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DEGS1_XENTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSAAREDF EWVYTDQPHA DRRKEILAKY PEIKSLMKPD HNLIWIVSLM VLTQLVAFYL  60
   61 VKDLDWKWLL FWTYVVGSCI SHSMTLAIHE ISHNSAFGNS KAMWNRCFGM FANLPLGLPY 120
  121 SVSFKRYHMD HHRYLGGDGV DVDIPTDFEG WFFCTPLRKL VWIILQPLFY TIRPLCINPK 180
  181 PITRLEIINL VVQFSFDALI YYTLGGKALF YMLVGSILGL GLHPISGHFI AEHYMFLKGH 240
  241 ETYSYYGPLN YLTFNVGYHN EHHDFPSVPG KNLPLVRKIA AEYYDPLPKY SSWVKVLYDF 300
  301 VMDDTLSPYS RMKRKLKGDL KLE

Type	Start	End	Confidence
Cytoplasmic	1	41	0.92
Transmembrane Helix	42	61	0.95
Non-Cytoplasmic	62	67	0.85
Transmembrane Helix	68	89	0.89
Cytoplasmic	90	101	0.83
Transmembrane Helix	102	124	0.77
Non-Cytoplasmic	125	207	0.56
Transmembrane Helix	208	230	0.82
Cytoplasmic	231	323	0.84