YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIAT9_RAT
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNEFTSAKL RSDCSRTSLQ WYTQTQHKMR RPSLLLKDIL KCMLVVFGVW LLYILKLNYT  60
   61 AEECDMKKLN YVDPARIKRA HRNTQEVFQK ECRPGHAKKT MDLLFKGKYS MDLEPFVQKI 120
  121 PTASEAELKY DPPFGFRKFS SKVQSLLDML PEHDFPEHLR AKHCKRCVVI GNGGILHGLE 180
  181 LGHALNQFDV VIRLNSAPIE GYSEHVGNKT TIRMTYPEGA PLSDAEYYAN DLFVAVLFKS 240
  241 VDFKWLQAMV KNESLPFWIR LFFWKQVAEK IPLQPKHFRI LNPVIIKETA FDILQYSEPQ 300
  301 SRFWGHDKNI PTIGIIAIVL ATHLCDEVSL AGFGYDLSQP RTPLHYFDSQ CMGAMNWQVM 360
  361 HNVTTETQFL QKLIKEGVVQ DLSGGIH

Type	Start	End	Confidence
Cytoplasmic	1	33	0.63
Transmembrane Helix	34	54	0.55
Non-Cytoplasmic	55	387	0.98