YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50417263, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFNSCEAFD NPVSYFYNRT GKPISPNWRT HDFVVVGLGL PICVFIILAN MLVIAAIIVN  60
   61 RKFHFPIYYL LGNMAAADLF AGISYSYLVF HTGPWTINLT IKEWFVRGAL INMSLTASVV 120
  121 NLLAVAVERH QTIFTMQLHT TMTRWRVVML IVTIWVVAVV MGLVPTMGWN CVCDQLGCST 180
  181 VAPLYSRSFL VFWAILNLMA FFIMVAVYTH IFIYVRRRSQ VMSPHTDQPS NNQTVISLMK 240
  241 TMSMILGAFV ICWTPGLVIL LLDGLKCIEC HVLKYEKYCL VLAECNSLVN PIIYSFRDED 300
  301 MRTTYKRILC FPWRRMRPHE GPSGIRFEPV KTGAPPEKNS QNSSSPEAAP PQSPLS

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.93
Transmembrane Helix	35	58	0.91
Cytoplasmic	59	66	0.81
Transmembrane Helix	67	89	0.90
Non-Cytoplasmic	90	104	0.89
Transmembrane Helix	105	127	0.89
Cytoplasmic	128	146	0.87
Transmembrane Helix	147	167	0.93
Non-Cytoplasmic	168	189	0.90
Transmembrane Helix	190	213	0.92
Cytoplasmic	214	241	0.86
Transmembrane Helix	242	262	0.75
Non-Cytoplasmic	263	356	0.80