YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57525964, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWEFRSMSFW RAVFAEFYGT MFFVFFGLGA ALRWTTGPHN VLQVAFCFGL AAATFIQSIG  60
   61 HISGGHINPA VTFAYLIGSQ MSLFRAFFYI CAQCLGALAG AAVLYGVTPT NMRGNLALNT 120
  121 LQPGISMGMA TTIEIFLTLQ LVVCVFAVTD ERRNGRLGSA ALSIGFSVLV GHLLGMYYTG 180
  181 AGMNPARSFA PAVLYRNFIN HWVYWVGPMI GAAMGALLYD FMLFPRVRGL SERLAVLKGN 240
  241 KPTEPEAQQE TRGEPIELKT QAL

Type	Start	End	Confidence
Cytoplasmic	1	11	0.87
Transmembrane Helix	12	32	0.92
Non-Cytoplasmic	33	41	0.76
Transmembrane Helix	42	65	0.81
Cytoplasmic	66	85	0.78
Transmembrane Helix	86	107	0.93
Non-Cytoplasmic	108	124	0.93
Transmembrane Helix	125	148	0.89
Cytoplasmic	149	156	0.88
Transmembrane Helix	157	180	0.87
Non-Cytoplasmic	181	201	0.94
Transmembrane Helix	202	223	0.94
Cytoplasmic	224	263	0.98