YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HXB7_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLYYANAL FSKYPAASSV FAPGAFPEQT SCAFASNPQR PGYGAGPGAP FSASVQGLYS  60
   61 GGGGMAGQSA AGVYEAGYGL EPSSFNMHCA PFEQNLSGVC PGDPAKAAGA KEQRDSDLAA 120
  121 ESNFRIYPWM RSSGTERKRG RQTYTRYQTL ELEKEFHYNR YLTRRRRIEI AHALCLTERQ 180
  181 IKIWFQNRRM KWKKENKTSG PGTTGQDKAE ADEEEEEEE

Type	Start	End	Confidence
Signal Peptide	1	32	0.60
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	219	0.99