YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM38B_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYPWDDLTL AFSRTSMFPF FDIAHYLVSV MALKQRPGAV AAAWSNPLSS WLSAMLHCFG  60
   61 GGILSCILLA EPPLKFLTNH TNILLASSIW YIVFFCPRDL VSQGYSYQPI QLLAAGMKEV 120
  121 TRTWKIVGGV AHANGYYRNG WIVMIAVGWA RGAGGAIITA CEQLLKGDWK PEGDEWLKMS 180
  181 FPCKVTLLGS IMFTFQHTRH LAISKHDLMF LYTIFLVTIK VTMMMTKDAA VTLTPFEDTL 240
  241 TRMLFGRQQQ QFSLSEKKAE VKPSSNGSAS SASKRGTEPP SSAKRHAKKE D

Type	Start	End	Confidence
Cytoplasmic	1	9	0.71
Transmembrane Helix	10	33	0.63
Non-Cytoplasmic	34	47	0.71
Transmembrane Helix	48	70	0.88
Cytoplasmic	71	75	0.73
Transmembrane Helix	76	97	0.74
Non-Cytoplasmic	98	139	0.78
Transmembrane Helix	140	161	0.77
Cytoplasmic	162	180	0.72
Transmembrane Helix	181	198	0.58
Non-Cytoplasmic	199	207	0.48
Transmembrane Helix	208	224	0.62
Cytoplasmic	225	291	0.70