YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49256669, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSYNAKEE DGHHPGLVGS GGPGAVKSKK PDNTAFKQQR LPAWQPILTA GTVLPAFFMI  60
   61 GLIFIPIGIG LFVTSNNIKE FEIDYTGVDM SSPCYNCAQN YSWNSTSVCT CTVPFTLDQP 120
  121 FESNVFMYYG LSNFYQNHRR YVKSRDDSQL NGDKSSLLNP SKECEPYRTS DRKPIAPCGA 180
  181 IANSLFNDTL ELFYIHPNGS KIGIHLVKTG IAWWTDKHVK FRNPGGSNNN LSVVFQDTSK 240
  241 PVNWRKAVYE LDPADPENNG FVNEDLIVWM RTAALPTFRK LYRIIQKKKD TMTPTLPPGN 300
  301 YSLEVAYNYP VRSFDGRKRV ILSTISWMGG KNPFLGIAYI TVGSVCFFLG VVLLIIHHKY 360
  361 GNRNNNADIP N

Type	Start	End	Confidence
Cytoplasmic	1	46	0.63
Transmembrane Helix	47	73	0.83
Non-Cytoplasmic	74	334	0.62
Transmembrane Helix	335	357	0.92
Cytoplasmic	358	371	0.59