YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38505385, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQGKQRALG RIKSSFLKWL GVPISLTDGS FWSAWGGMGS SSGETVTADS ALQLSAVWSC  60
   61 VRLIAETIAT LPLNLYQTKP DGTRVLAKQH RLYTVIHSQP NAENTAAEFW EVIVASMLLW 120
  121 GNGYARKLRS AGVLIGLELM LPQRTTVKRL TSGALQYTYR NVDGTVSTLA EDDVFHVRGF 180
  181 SLDGLMGLTP IQYAREVLGN STAANKTSAS VFRNGLRPSG VLSTDQILQK EKRAEIRTDL 240
  241 AEQFGGAMQA GKTMVLEAGM KYQAITMNPG DVQLLETRAF NIEEICRWYR VPPFMVGHSE 300
  301 KSTSWGTGIE QQTLGFLTFT LRPWLTRIEQ AARRSLLRPG ERDQFYAEFS VEGLLRADSA 360
  361 GRAAFYSTMT QNGLMTRDEC RAKENLPPMG GNAAVLTVQS ALLPIDKLGE HTTATAAQDA 420
  421 LKAWLYQEEK TRATQER

Type	Start	End	Confidence
Cytoplasmic	1	15	0.72
Transmembrane Helix	16	36	0.69
Non-Cytoplasmic	37	437	0.85