YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50838909, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRGGGGGG RAGRVGGGGG GGAGGGGGGG GGGAAAAAAG GGGDFGRAVA RAAVARMLEA  60
   61 AGFVCAHRSA VDALVDVLLR YICQLGRAAT FHANLAGRAA ANECDVIQFL EECGAAYYGF 120
  121 AGAASVSARC LANSAVVKDM AVFVGASKES PFAGRPLPRF PVQRVPLHST TSFAVLGRES 180
  181 GMSHVPEWLP AFPEPHTYVR SELWSEEVAK AGADEVERAR QRRKAEKSLL SLQRRLALAG 240
  241 ADGFRPGMLV DDAVKANGLD VVESKANPFH ERALPYGEKA VSEVTMPGVG KTFSVVEAFA 300
  301 PAFEESKGGE FDEGMDQGQN DSQTQKRVVP KERPPVYFRI GIDKKSMVMA LNSRALVELK 360
  361 DPWFFKEDKE QRAELILREA MDNPHELTQL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.44
Transmembrane Helix	16	39	0.58
Non-Cytoplasmic	40	390	0.69