YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38194916
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.69
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSLLPKAT PCILLLVLLY CTCFTSTDAY DPLDPNGNIT IKWDIITWTP DGYVAVVTMN  60
   61 NFQQYRHIAS PGWRLGWTWA KKEVIWSMMG GQTTEQGDCS KFKAGIPHCC KKDPTVVDLL 120
  121 PGTPYNQQIA NCCKGGVLGS WVQDPTNAVS SFQVSVGRAG TTNKTVKVPK NFTLSAPGPG 180
  181 YTCGPAKIVK PTQFIQADKR RVTQALMTWN VTCQYSQFLA QKTPSCCVSL SSFYNDTIVP 240
  241 CPTCACGCQG NSSLSGSCVN SQTPHLASVV SGSGKNNLSP LVQCTSHMCP VRIHWHVKVN 300
  301 YKEYWRVKVT ITNFNYRMNY SEWNMVVQHP NFDNLTQLFS FNYKSLTPYG SINDTAMLWG 360
  361 VKFYNDFLSQ AGPNGNVQSE LLFRKDKATF TFDKGWAFPR RIYFNGDNCV MPPPDAYPWL 420
  421 PNAGSRQEVS LFALVIAYLV ALVFYAHA

Type	Start	End	Confidence
Signal Peptide	1	29	0.96
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	428	0.99
Transmembrane Helix	429	447	0.66
Cytoplasmic	448	448	0.69