YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.99
Transmembrane Helix	31	50	0.96
Non-Cytoplasmic	51	57	0.73
Transmembrane Helix	58	78	0.88
Cytoplasmic	79	98	0.89
Transmembrane Helix	99	121	0.86
Non-Cytoplasmic	122	147	0.88
Transmembrane Helix	148	169	0.91
Cytoplasmic	170	208	0.91
Transmembrane Helix	209	229	0.90
Non-Cytoplasmic	230	263	0.86
Transmembrane Helix	264	288	0.86
Cytoplasmic	289	307	0.89
Transmembrane Helix	308	329	0.78
Non-Cytoplasmic	330	377	0.77
Transmembrane Helix	378	400	0.90
Cytoplasmic	401	406	0.66
Transmembrane Helix	407	430	0.88
Non-Cytoplasmic	431	455	0.70
Transmembrane Helix	456	475	0.75
Cytoplasmic	476	493	0.73
Transmembrane Helix	494	517	0.89
Non-Cytoplasmic	518	589	0.68
Transmembrane Helix	590	614	0.88
Cytoplasmic	615	623	0.75
Transmembrane Helix	624	648	0.73
Non-Cytoplasmic	649	664	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENERVEREQ SQFQEDEFID SRKPPPWRKQ ITVRAIVASL LIGIVYSVIC LKLNLTTGLV  60
   61 PNLNISSALL AFVFLKSWTK VLQKAGIATT PFTRQENTIA QTCAVACYSI SLAGGFASYL 120
  121 LGLNRRTYEE TGVNTEGNNP RGIKEPGVGW MTSFLFVTSF IGLVVLVPLR KVMIIDYKLT 180
  181 YPSGTATAVL INGFHTSKGD KTAKKQIRGF IKSFGLSFFW AFFGWFYSGG EKCGFSQFPT 240
  241 FGLQALDKTF YFDFSMTYVG AGMICSHLVN LSLLFGAILS WGIMWPLIAR LKGEWFPATL 300
  301 KDNSMQGLNG YKVFICIALI LGDGLYNFVK ILFFTGRSFH SRLSKTNSIS TLVEVPEDST 360
  361 KESDNLKREN EVFVRESIPL WMACVGYLFF SLVSIIAIPL MFPQLKWYFV LVAYLLAPSL 420
  421 SFCNAYGAGL TDMNMAYNYG KAALFVMAAL AGKNDGVVAG MVACGLIKSI VSVSADLMHD 480
  481 FKTGHLTQTS PRSMLVAQAI GTAIGCVVAP LTFFLFYKAF DVGNQNGEYK APYAMIYRNM 540
  541 AIIGVQGPSA LPKHCLELCY GFFAFAVAAN LARDLLPDKP GKWIPLPMAM AVPFLVGGSF 600
  601 AIDMCIGSLV VYVWKKVNRK KADVMVPAVA SGLICGDGLW ILPSSLLALA KVRPPICMNF 660
  661 TAAH