YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108467391, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPAVKSAS TPKKATAQFL WEAKTKSGES KKGEMEAMDV EAVNARLKSL GLNPVKVRKK  60
   61 SMLDGDITIP GFGGVEGKDI LVFTRQFATM IDAGLPLVQC LDILASQMDN PSFKKVLFAI 120
  121 KSKVEQGSTF ADALKEHPKV FDELYVQLCA AGEVGGILDA ILNRLAAYRE KNEKLKSKVK 180
  181 SAMTYPIIVI LVAIGVTAVL LLKVTPVFEK MFADFGSELP GPTQMIVNFS HMAQEYFFHV 240
  241 AGSIVAVVMS FTWSYRQPRG RKFWDKVFLF MPVFGPVLRK VAVARFTRTL GTMISSGVPI 300
  301 LDALDVTAKT AGNRTVEDAI IYVRGKIAEG KNIAGPLAET KVFPSMVVQM IGVGEATGAM 360
  361 DTMLNKIADF YDDEVDAAIN SLTAMIEPVL MVFLGGVVGG FLIGMYLPIF SLAGAIQ

Type	Start	End	Confidence
Cytoplasmic	1	182	0.93
Transmembrane Helix	183	205	0.90
Non-Cytoplasmic	206	235	0.95
Transmembrane Helix	236	255	0.95
Cytoplasmic	256	388	0.83
Transmembrane Helix	389	410	0.92
Non-Cytoplasmic	411	417	0.62