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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|51092131
Protein type: Transmembrane
Type Confidence: 0.79
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEPYTKSA EIEPQLCQVI DNNEDVTTKA TKCTKSNSGV GWRQMLIGFL LICFGISNSW  60
   61 QYKNVHMPSS SSLIASPPAS AFVNTPATLL FTTRHDIQVA NITRPTGGPQ IDVIVRDLAE 120
  121 AMAIDFYYAK NLVCWTDSGR EIIECAQTNS SALQPLLRAP KQTVISTGLD KPEGLAMDWY 180
  181 TDKIYWTDGE KNRIEVATLD GRYQKVLFWT DLDQPRAVAV VPARKLLIWT DWGEYPKIER 240
  241 ASMDGDPLSR MTLVKEHVFW PNGLAVDLKN ELIYWTDGKH HFIDVMRLDG SSRRTIVNNL 300
  301 KYPFSLTFYD DRLYWTDWQR GSLNALDLQT RELKELIDTP KAPNSVRAWD PSLQPYEDNP 360
  361 CAHNNGNCSH LCLLATNSQG FSCACPTGVK LISANTCANG SQEMMFIVQR TQISKISLDS 420
  421 PDYTIFPLPL GKVKYAIAID YDPVEEHIYW SDVETYTIKR AHADGTGVTD FVTSEVRHPD 480
  481 GLALDWLARN LYWTDTVTDR IEVCRLDGTA RKVLIYEHLE EPRAIAVAPS LGWMFWSDWN 540
  541 ERKPKVERAS LDGSERVVLV SENLGWPNGI ALDIEAKAIY WCDGKTDKIE VANMDGSGRR 600
  601 VVISDNLKHL FGLSILDDYL YWTDWQRRSI DRAHKITGNN RIVVVDQYPD LMGLKVTRLR 660
  661 EVRGQNACAV RNGGCSHLCL NRPRDYVCRC AIDYELANDK RTCVVPAAFL LFSRQEHIGR 720
  721 ISIEYNEGNH NDERIPFKDV RDAHALDVSV AERRIYWTDQ KSKCIFRAFL NGSYVQRIVD 780
  781 SGLIGPDGIA VDWLANNIYW SDAEARRIEV ARLDGSSRRV LLWKGVEEPR SLVLEPRRGY 840
  841 MYWTESPTDS IRRAAMDGSD LQTIVAGANH AAGLTFDQET RRLYWATQSR PAKIESADWD 900
  901 GKKRQILVGS DMDEPYAVSL YQDYVYWSDW NTGDIERVHK TTGQNRSLVH SGMTYITSLL 960
  961 VFNDKRQTGV NPCKVNNGGC SHLCLAQPGR RGMTCACPTH YQLAKDGVSC IPPRNYIIFS1020
 1021 QRNCFGRLLP NTTDCPNIPL PVSGKNIRAV DYDPITHHIY WIEGRSHSIK RSLANGTKVS1080
 1081 LLANSGQPFD LAIDIIGRLL FWTCSQSNSI NVTSFLGESV GVIDTGDSEK PRNIAVHAMK1140
 1141 RLLFWTDVGS HQAIIRARVD GNERVELAYK LEGVTALALD QQSDMIYYAH GKRIDAIDIN1200
 1201 GKNKKTLVSM HISQVINIAA LGGFVYWLDD KTGVERITVN GERRSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle