YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51039843
Protein type:	Globular with Signal Peptide
Type Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTSSSSPG FGNLLAIFAP GQYSQMLLLQ LLGCCGGQVT PVLSSAKGGA VCFPNFCFSA  60
   61 FGTAEMCPLS PKMQSLLNPL EMALTLFTLP SSSERGLDCG SSDVARMQGV LARVRGPFTP 120
  121 TQWMELEHQA LIYKHIVANA PVPAGLLLPI RRSLHPPVFP HFSSGGILGS SSLGWGSFQL 180
  181 GYSGSADSEP GRCRRTDGKK WRCSRDAVVD QKYCERHINR GRHRSRKHVE GQSSHAAKAT 240
  241 VPAIAQPPIG ASNGKLSGSH GVSNELTKTL ATNRMMLDKA NLIERSQDYT NQQHNILQNN 300
  301 TKGDNWSEEM SSQADYAVIP AGSLMNTPQS ANLNPIPQQQ RCKQSLFGKG IQHDDIQLSI 360
  361 SIPVDNSDLP TNYNKAQMDH VVGGSSNGGN NTRASWIPGS WEASIGGPLG EFFTNTSSAS 420
  421 DDKGKSRHPP SLNLLADGHT TSPQLQSPTG VLQMTSFSSV PSSTVSSPAG SLCNGLLTSG 480
  481 LVNAQTVQTL

Type	Start	End	Confidence
Signal Peptide	1	24	0.51
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	490	0.90