YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47779324
Protein type:	Globular with Signal Peptide
Type Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPVTSRRHF SFSLYMLRSS SPHTHVLYSS SFLPSFVSSR SSAPKHNRKT LPPPMAACID  60
   61 TCRTGKPQIS SRDSTRSHDD ESGFRYLNYY RTGYPDRVSR APINGIQTRT LHTRPLVEDL 120
  121 DRDAEIDDVW EKIREEAKSD IQREPIVSGY YHASIVSQRS LEAALANTLS VKLSNLNLPS 180
  181 NTLFDLFNGV LEEHPEIVEC VKQDLIAVKE RDPACISYVH CFLHFKGFLA CQAHRIAHEL 240
  241 WTQDRKILAL LIQNRVSEAF AVDFHPGAKI GTGILLDHAT AIVIGETAVV GNNVSILHNV 300
  301 TLGGTGKQCG DRHPKIGDGV LIGAGTCILG NITIGEGAKI GAGSVVLKDV PPRTTAVGNP 360
  361 ARLLGGKDNP KKHDKIPGLT MDQTSHISEW SDYVI

Type	Start	End	Confidence
Signal Peptide	1	22	0.59
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	395	0.97