YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11139618
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENVSSRMD TPTNISLVGS GDAVSESLEY KTISVFLVLL VCGVGIVGNI MVVLVVLTTR  60
   61 HMRTPTNCYL MSLAVADLTV LVAAGLPNIS ESLMATWVYG HAGCLGITYF QYLGINVSSC 120
  121 SITAFTVERY IAICHPMRAQ TVCTVSRAKR IIAGVWAFTC VYCMLWLFLV DIQVNQEGRV 180
  181 QCGYRVSRDL YLPIYLIDFA IFYVIPLLLA IVLYGLIARI MYLNPLPHPP DSRTTSAPTL 240
  241 RRSCKEPADG GKAGRQGRPK SALSSRKQVT KMLAVVVVLF ALLWMPYRTL VLINSFMSTP 300
  301 YLDAWFLLFC RTCIYANSAI NPVVYNLMSQ KFRSAFRGLY HCQRDDGHQR SLSMLQSGYS 360
  361 LGRDPRLCNN TNGTRDTPKK INSATPDQKQ SRGMKDNMEN KENMDKLISD DIKNTTDSNI 420
  421 NKSAVENSNM EKHTDVLKTD KKQNSEDKAM PTVENVDRKF NDNGKNMEEK DDTAKDLIAD 480
  481 LCSIEKTLLN SSELKPILVQ SEYSDPELNH SIV

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.92
Transmembrane Helix	35	57	0.95
Cytoplasmic	58	67	0.82
Transmembrane Helix	68	89	0.89
Non-Cytoplasmic	90	107	0.78
Transmembrane Helix	108	131	0.79
Cytoplasmic	132	150	0.91
Transmembrane Helix	151	170	0.94
Non-Cytoplasmic	171	198	0.90
Transmembrane Helix	199	218	0.93
Cytoplasmic	219	268	0.95
Transmembrane Helix	269	287	0.93
Non-Cytoplasmic	288	304	0.82
Transmembrane Helix	305	327	0.74
Cytoplasmic	328	513	0.82