YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.98
Transmembrane Helix	38	60	0.87
Non-Cytoplasmic	61	73	0.76
Transmembrane Helix	74	96	0.86
Cytoplasmic	97	113	0.84
Transmembrane Helix	114	135	0.93
Non-Cytoplasmic	136	156	0.89
Transmembrane Helix	157	175	0.91
Cytoplasmic	176	183	0.80
Transmembrane Helix	184	207	0.88
Non-Cytoplasmic	208	215	0.84
Transmembrane Helix	216	238	0.89
Cytoplasmic	239	258	0.90
Transmembrane Helix	259	277	0.85
Non-Cytoplasmic	278	297	0.71
Transmembrane Helix	298	318	0.84
Cytoplasmic	319	335	0.81
Transmembrane Helix	336	358	0.94
Non-Cytoplasmic	359	379	0.88
Transmembrane Helix	380	401	0.80
Cytoplasmic	402	411	0.69
Transmembrane Helix	412	434	0.89
Non-Cytoplasmic	435	441	0.77
Transmembrane Helix	442	464	0.90
Cytoplasmic	465	481	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDAESTKDR LLLPVERVEN VTWSDLRDGS FTVELKRLIF FAAPMAAVVI AQFMLQIVSM  60
   61 MMVGHLGNLS LASASLASSF CNVTGFSFII GLSCALDTLS GQAYGAKLYR KLGVQTYTAM 120
  121 FCLALVCLPL SLIWFNMEKL LLILGQDPSI AHEAGKYATW LIPGLFAYAV LQPLTRYFQN 180
  181 QSLITPLLIT SYVVFCIHVP LCWFLVYNSG LGNLGGALAI SLSNWLYAIF LGSFMYYSSA 240
  241 CSETRAPLSM EIFDGIGEFF KYALPSAAMI CLEWWSYELI ILLSGLLPNP QLETSVLSVC 300
  301 LQTISTMYSI PLAIAAAAST RISNELGAGN SRAAHIVVYA AMSLAVIDAL IVSMSLLIGR 360
  361 NLFGHIFSSD KETIDYVAKM APLVSISLML DALQGVLSGI ARGCGWQHIG AYINLGAFYL 420
  421 WGIPIAASLA FWIHLKGVGL WIGIQAGAVL QTLLLALVTG CTNWESQADK ARNRMALAYG 480
  481 T