YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50881995
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVSSRARWV ALGLGVLGLL CAALGVIMIL MVPSLIKQQV LKNVRIDPSS LSFGMWKEIP  60
   61 VPFYLSVYFF EVVNPSEVLN GQKPVVRERG PYVIREFRQK VNITFNDNDT VPYIENRSLR 120
  121 FQPDRSQGSE SDYIVLPNIL VLGGAVMMED KPTSLKLLMT LGLVTMGQRA FMNRTVGEIL 180
  181 WGYEDPFVNF LSKYFPGMFP IKGKFGLFVG MNDSSSGVFT VFTGVQNFSK IHLVDKWNGL 240
  241 SEVNYWHSEQ CNMINGTAGQ MWAPFMTPES SLEFFSPEAC RSMKLTYQES RVFEGIPTYR 300
  301 FTAPDTLFAN GSVYPPNEGF CPCRESGIQN VSTCRFGAPL FLSQPHFYNA DPVLSEAVLG 360
  361 LNPDPKEHSL FLDIHPVTGI PMNCSVKMQL SLYIKSVKGV GQTGKIEPVV LPLLWFEQSG 420
  421 MMGGKTLNTF YTQLVLMPQV LHYAQYVLLG LGGLLLLVPI IYQLRSQGPE DTTSPPNLIA 480
  481 WSDQPPSPYT PLLEDSLSGQ PARATS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.67
Transmembrane Helix	9	31	0.68
Non-Cytoplasmic	32	441	0.96
Transmembrane Helix	442	462	0.77
Cytoplasmic	463	506	0.77