YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14389419
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.97
Transmembrane Helix	99	122	0.82
Non-Cytoplasmic	123	134	0.91
Transmembrane Helix	135	154	0.89
Cytoplasmic	155	163	0.73
Transmembrane Helix	164	185	0.91
Non-Cytoplasmic	186	193	0.62
Transmembrane Helix	194	215	0.92
Cytoplasmic	216	222	0.84
Transmembrane Helix	223	245	0.90
Non-Cytoplasmic	246	252	0.80
Transmembrane Helix	253	273	0.95
Cytoplasmic	274	292	0.94
Transmembrane Helix	293	315	0.92
Non-Cytoplasmic	316	325	0.81
Transmembrane Helix	326	346	0.96
Cytoplasmic	347	363	0.95
Transmembrane Helix	364	386	0.90
Non-Cytoplasmic	387	400	0.84
Transmembrane Helix	401	421	0.87
Cytoplasmic	422	426	0.62
Transmembrane Helix	427	448	0.89
Non-Cytoplasmic	449	455	0.81
Transmembrane Helix	456	477	0.88
Cytoplasmic	478	487	0.78
Transmembrane Helix	488	510	0.84
Non-Cytoplasmic	511	561	0.93
Transmembrane Helix	562	583	0.91
Cytoplasmic	584	598	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTDEKLPPT TSASISSSST THEKSDAEQA TLAREAMKTD AELSEKPLGK TPSVHDGDND  60
   61 NPIELKKTKS AADIQQEELN RVHTSAEGVE YPTGVKLQLI SLALCLSVFL MALDNSIIAT 120
  121 AIPKITDQFH SLNDVGWYGS AYLLTTASFQ LLFGKFYSYF SIKWVYLVAI AIFELGSLIC 180
  181 GVAPNSIALI IGRAIAGLGS AGIFSGALII VAYSVPLVKR PMYTGLIGAM YGIASVAGPL 240
  241 LGGVFTDKAT WRWCFLINLP IGAVTVLVIL IFFKAPDREA VAVLPWSERI KEFDLLGTAF 300
  301 FIPAIICLLL ALQWGGTKYP WGNGRIIALF VLFGVLIGIF IAIQFWKGDS ATVPPSIMKK 360
  361 RSMWSAAWFS FCLGSYFLLL IYYLPIWFQA VKGDSAVKSG ISNIPMVLTL VIVSIISGAL 420
  421 VTTIGYYAPL MIVSSVIASI GIGLLTTFKP DTNHAAWIGY QCLAGIGIGF GMQQPLIACQ 480
  481 TVLDISQVPT GTSVIIFVQT LGGALFVSIG QNVFTNKLAQ NLAHYVPDLN PAVVLTTGAT 540
  541 SIQKDIAPEY LAGVTISYNN ALTQSFLVAA VMAALTIIGS VFIEWKSVKG KKIEMAAA