YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.97
Transmembrane Helix	18	38	0.89
Non-Cytoplasmic	39	50	0.77
Transmembrane Helix	51	70	0.94
Cytoplasmic	71	77	0.93
Transmembrane Helix	78	101	0.85
Non-Cytoplasmic	102	112	0.79
Transmembrane Helix	113	133	0.90
Cytoplasmic	134	143	0.90
Transmembrane Helix	144	165	0.89
Non-Cytoplasmic	166	197	0.84
Transmembrane Helix	198	218	0.89
Cytoplasmic	219	229	0.69
Transmembrane Helix	230	251	0.89
Non-Cytoplasmic	252	266	0.79
Transmembrane Helix	267	288	0.92
Cytoplasmic	289	294	0.77
Transmembrane Helix	295	314	0.85
Non-Cytoplasmic	315	319	0.77
Transmembrane Helix	320	339	0.95
Cytoplasmic	340	389	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNTDNRRS LWGVPEKLQL HIAMLTLQFG YAGFHVVSRA ALNMGISKLV FPVYRNIIAL  60
   61 LLLLPFAYFL EKKERPAITL NFLIQFFFLA LIGITANQGF YLLGLDNTSP TFASSMQNSV 120
  121 PAITFLMAAL LRIEKVRINR RDGISKILGT ALCVAGASVI TLYKGPTIYT PASHLHAHLL 180
  181 TTNSAVLAPL GNAAPKNWTL GCIYLIGHCL SWSGWLVFQA PVLKSYPARL SVTSYTCFFG 240
  241 IIQFLIIAAF CERDSQAWVF HSGWELFTIL YAGIVASGIA FAVQIWCIDR GGPVFVAVYQ 300
  301 PVQTLVVAIM ASIALGEEFY LGGIIGAVLI IAGLYFVLYG KSEERKFAAL EKAAIQSSAE 360
  361 HGIERAPVSR NSIKSSITTP LLHQSTDNV