YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166861, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.97
Transmembrane Helix	39	62	0.92
Non-Cytoplasmic	63	93	0.93
Transmembrane Helix	94	115	0.91
Cytoplasmic	116	124	0.83
Transmembrane Helix	125	146	0.92
Non-Cytoplasmic	147	153	0.84
Transmembrane Helix	154	177	0.81
Cytoplasmic	178	190	0.82
Transmembrane Helix	191	212	0.94
Non-Cytoplasmic	213	257	0.89
Transmembrane Helix	258	278	0.90
Cytoplasmic	279	296	0.75
Transmembrane Helix	297	315	0.69
Non-Cytoplasmic	316	321	0.63
Transmembrane Helix	322	343	0.87
Cytoplasmic	344	356	0.91
Transmembrane Helix	357	378	0.91
Non-Cytoplasmic	379	385	0.86
Transmembrane Helix	386	408	0.93
Cytoplasmic	409	416	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIRKANGL VDWLDQRLAV HKLLDVLMVK YWIPKQINFL WAMGVILTTL FAVLFVTGLL  60
   61 LVMYYKPDTA LAFDSVNKTI MQEVDYGWLW RHMHGVAASV VFLIIYIHML TGIYYGSYKK 120
  121 GREMIWVSGM LLFVVFSAEA FSGYMLPWGQ MSYWAAQVIT NLFGGIPFIG PELVIWIRGD 180
  181 YAVSDPTLTR FFMLHVCLLP IVIIAIIAFH FYSLRIPHVN NEISEELDFD LEAEKYMAGD 240
  241 TKGSKVIPFW PGFLSKDFMY ISFFMIFFFY LVCFKFEFAM DPINFDPANA LKTPAHIYPE 300
  301 WYFLWSYEVL RGFFFDIAGI KAFDIGLAAF GIAQVIFFLL PWLDRSDVVK PAHERPLFFI 360
  361 WFWILLIDLI VLTVYGKLPP TGVNAWVGFY ASIVFLLLLI VVLPVITIME RKGAKQ