YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166708, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTLFLQQL VNGLSLGSMY ALIAVGYTMV YGVLRLINFA HGDIMMVGAY AALFCMTNLN  60
   61 VPFLGALSLA MIFAACVGIA TDRIAYKPLR QAPRISLLIT AIGISFFLQN LFNMLFTSTP 120
  121 RTFTPPSYFE ESVNFGGVIT TYGSLMVPAL TFVILIAVLW ILYKSKYGIA IRALAFDIQT 180
  181 VNLMGIDANR IIAIVFALGS ALAAVGGVFW AANYYSVEPT MGTLIGLKAF AAAVLGGIGS 240
  241 VVGAVLGGLI IGFTEVVVVA FFPDLSGFKD AFAFIFLVFI LLFRPTGILG INFEKSRF

Type	Start	End	Confidence
Cytoplasmic	1	9	0.61
Transmembrane Helix	10	37	0.74
Non-Cytoplasmic	38	60	0.51
Transmembrane Helix	61	81	0.87
Cytoplasmic	82	94	0.78
Transmembrane Helix	95	116	0.90
Non-Cytoplasmic	117	138	0.91
Transmembrane Helix	139	163	0.88
Cytoplasmic	164	190	0.70
Transmembrane Helix	191	212	0.92
Non-Cytoplasmic	213	228	0.56
Transmembrane Helix	229	262	0.75
Cytoplasmic	263	270	0.45
Transmembrane Helix	271	291	0.90
Non-Cytoplasmic	292	298	0.51