YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237763, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.91
Transmembrane Helix	8	27	0.92
Non-Cytoplasmic	28	37	0.78
Transmembrane Helix	38	57	0.94
Cytoplasmic	58	83	0.90
Transmembrane Helix	84	108	0.88
Non-Cytoplasmic	109	138	0.95
Transmembrane Helix	139	158	0.96
Cytoplasmic	159	167	0.91
Transmembrane Helix	168	189	0.89
Non-Cytoplasmic	190	215	0.87
Transmembrane Helix	216	236	0.92
Cytoplasmic	237	250	0.79
Transmembrane Helix	251	271	0.95
Non-Cytoplasmic	272	295	0.90
Transmembrane Helix	296	320	0.88
Cytoplasmic	321	340	0.86
Transmembrane Helix	341	361	0.96
Non-Cytoplasmic	362	381	0.87
Transmembrane Helix	382	401	0.94
Cytoplasmic	402	420	0.93
Transmembrane Helix	421	443	0.92
Non-Cytoplasmic	444	444	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKFSKIGF ILAVAGSAVG LGNAWKFPTL VGQSGGSAFI LLYIILTLGV GFVIFLAELS  60
   61 IGKISEKDPV NAYEKLAPSN KKAWSYVGFT MVGAILIVSF YTLVIGWIVK YVFLSITGNL 120
  121 PMDLEVSKAQ FGFFISEDFL SQFICFTLVF LCVFYIVSKG VKNGIEKLNV WMMPSLFILL 180
  181 ILMLVYAISK DGFIMAVKFL FVPDFSKINT SNVLEALGLA FFSLSLGVGT IITYSASLPD 240
  241 KTNFITSTLN IIFINLLVGL LMGLVVFTFI FEFGYNPNQQ GPGLVFISLA TLFEKIGVIG 300
  301 CIFGAAFFIS LIFAGITSAV SMIEPFTFYL INTFGMSRKK ALILIGIVVY ILGMLCILSS 360
  361 LKSTQFGFFG MSFFDLLDSV SSKVIMPLGG ILAAIFVGFV MKKEALKILF KPYMRGIFFE 420
  421 LWYVFLRFIS PLAVVIVMIA AFLK