YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57238203, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	29	0.93
Non-Cytoplasmic	30	38	0.81
Transmembrane Helix	39	59	0.96
Cytoplasmic	60	81	0.88
Transmembrane Helix	82	106	0.87
Non-Cytoplasmic	107	134	0.96
Transmembrane Helix	135	157	0.92
Cytoplasmic	158	170	0.86
Transmembrane Helix	171	190	0.93
Non-Cytoplasmic	191	216	0.89
Transmembrane Helix	217	239	0.86
Cytoplasmic	240	249	0.91
Transmembrane Helix	250	272	0.89
Non-Cytoplasmic	273	295	0.85
Transmembrane Helix	296	319	0.91
Cytoplasmic	320	338	0.87
Transmembrane Helix	339	361	0.90
Non-Cytoplasmic	362	379	0.94
Transmembrane Helix	380	403	0.89
Cytoplasmic	404	423	0.94
Transmembrane Helix	424	445	0.94
Non-Cytoplasmic	446	447	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRQTWSSTL TYILTVAGAT IGFGATWRFP YLVGENGGGA YVLVFCIAMI IIGIPVILVE  60
   61 NVIGRKAMTN SVDAFKQKWQ SIGYMGLLGS FGIMAYYMVL GGWVLVYIWE LTLGNFSLAN 120
  121 VVSKEFTHQF FNDKIAFNPL GVGIFTTVFV IINYIILKRG IIDGIEKSVK FLMPLLFICL 180
  181 IIVVGRNLTL DGAMAGVKFY LEPDFSKILS PKLLIDVLGQ VFFALSLGFG VMITLSSHLN 240
  241 KNENMAKTAI YTGVLNTIIA VLAGFMIFPA LFSAGLAPDS GPSLVFETLP IAFSHIHFGT 300
  301 IVCILFFVLL LIAALTTSLP IYQVIISVLE EKFKYSKNLS INLTLGFIFI LGNLPCILTY 360
  361 GPWRDIVIIK GKNIFDSFDF ISGNILFVLT AFFCCIYVGW ILGKQESLKE LSNNNTLKSS 420
  421 WFGIWFYYVK YIVPLIILII FIYGILN