YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166190, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGEDQEKTE EPTSKKIEDA RKEGNVPKSQ DAAAIVTLII GVTITLFMMS FMGERIVNLY  60
   61 RYYQSFIGVE FDLRIIQAIM IKSIFEVLII LAPIVLSIMI AGVLGNIMQF GFIFTTKPIM 120
  121 PNLGKINPLK GLKNLFSLKK IVESIKIILK VGIVFTIAFI VLLKFMQELP RVELYTMVAQ 180
  181 LTWLRDRAIV LAAIVIVAFL IIAVLDVFLV RFQYFKGLRM SKQEIKDEYK QMEGDPQVKG 240
  241 RIRRLQMEAA RRRMVQDVAG ADVVITNPTH YAVAIRYDTG KEQAPRVVAK GVDFLALRIK 300
  301 QVAYENNVVV YENPPLAREL YKACDVNDLI PREMFKAVAE VLGFVYNTNN KSRLAGQVKK 360
  361 GN

Type	Start	End	Confidence
Cytoplasmic	1	31	0.74
Transmembrane Helix	32	53	0.90
Non-Cytoplasmic	54	86	0.69
Transmembrane Helix	87	110	0.86
Cytoplasmic	111	146	0.77
Transmembrane Helix	147	167	0.93
Non-Cytoplasmic	168	187	0.84
Transmembrane Helix	188	210	0.95
Cytoplasmic	211	362	0.86