YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50199436
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.89
Transmembrane Helix	40	58	0.87
Non-Cytoplasmic	59	79	0.81
Transmembrane Helix	80	99	0.83
Cytoplasmic	100	314	0.99
Transmembrane Helix	315	338	0.87
Non-Cytoplasmic	339	345	0.81
Transmembrane Helix	346	365	0.92
Cytoplasmic	366	434	0.95
Transmembrane Helix	435	453	0.85
Non-Cytoplasmic	454	490	0.85
Transmembrane Helix	491	511	0.88
Cytoplasmic	512	559	0.89
Transmembrane Helix	560	582	0.86
Non-Cytoplasmic	583	588	0.76
Transmembrane Helix	589	610	0.87
Cytoplasmic	611	621	0.77
Transmembrane Helix	622	644	0.92
Non-Cytoplasmic	645	653	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNKNDEGQK LKRKSLYENY HKINQTSLLS HNSLEIDMKG FLNLLIIIIC TTHFRLILEN  60
   61 FKKYGLIIKI PKNCDLVKNL PLLFCFISLH VTIFFSWFIE RYVTSWLYTC IDEDDQHTFK 120
  121 NIPMDDLSNK TDMIIEKKNY KSLYPNLIRR KKKNNTINND NENNNNNNNS NNNNSNNNNN 180
  181 SNNNNSNNNN NNNNNNYNNC LHKDPPSIYS YDSNTTYENE PYDKFDKDNS TYDKCDKDIL 240
  241 CDKKDSKQTC NDICKKKLKE LKNNNTEKNN NNNNNNNYIN TCAHNIHTHI KDDDISTSSC 300
  301 LKKKKKKKVH GWKSFHLSIF LLRCINSIFI LLFPLLTISY YDTEPTLSSI LLTISIVWFF 360
  361 KFYSFHEVCY EARKLHIENV DLKNLIEDDL SSEMYYIKRY PYCLDLKSYY TYILMPTMCF 420
  421 QFFYPRTEKI RWIHVAKHIF EVILLIIMIK IISDQYMFIT VENTFTMKEF TSAHFSVKIT 480
  481 HIIERMLKVS IPTLYIWLIG FLIVFHHWCN ILAEITRFGD RLFYKDWWNA SSFAEYWRKW 540
  541 NLPIYYFVCR HINKPLIYYG IHRNVSMIIV FFISAMLHEY LISIPLKLGF TGYIFFAFIC 600
  601 QIPLVQFTNN AYFKKHKTIG NSIFWIVFCF TGQPLILFIY YYLWIDKQGT LKN