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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|23957778, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRITLYDFI IDEIKGGTHY NRYYSDSDCS EEECKEDENV SKNINDNKEK NINDEYKYDF  60
   61 YKFLDHIFKA NSIPDNALDH MLNVPFFFEK LMSFSFLLCL DNILYDITFM PIQVVRSICL 120
  121 LISLFFKNAS RNIMNIFYNF KNYKFYKYAV NNYKDPKKKY KVRVIKNLNK LSYIKRKEND 180
  181 HMYESKYIKE KSLDESSILY KKLSRNLFSF HYLNGSRFSM NASHSDDIWV DTHLEKRINI 240
  241 NNNNNNEEEF NKSVEKQEND EHKNNICDNI TCSMKKKNIG KYFLYNRKRK MSSYNKDLKS 300
  301 ELLKYGHKYS VLKSREDVKL LRSKSIMLNC VNNNNDDDEE KGERKKYINN IKYLKNEIKL 360
  361 NYYFKYKGNM INDTYYSDNI YDMEKENWTK HKKNKKKINE IYNTTKKEKK NFFIHFFIIL 420
  421 FCFGKNILQN IKYLMNYIFI KIVYFFHIHK LYTFPIYKDE RKKKKMYTQS FEMNFHNTRN 480
  481 KQMVDFSDIH NRRGLLKIDY EQGGEIHRLN SVHFEDNEEH ISSNLFIKHM YKSNEVDMGK 540
  541 CVNMSNKEKT KQNNKNMRNL LMCAKRVIGR NNKLCASKND HIDTNKGENY SNEFVDNKFE 600
  601 ASCEQYGKDK DTKMNDPNNN MDNNMENNND NNNDNHIIMS DVMNNASYCT TEKHNNCDLL 660
  661 NMKANDNMFN ACSHNNDDDK IIKKGCHDLK YKKDNQNCNS FMVNEKNDDK FINDTNKCNP 720
  721 FLVKSFYKDE KYKKSNDDFT KLNENNKKDS KNMKNKKNIN NLQNMNKIKD MKKKLFKEHL 780
  781 NSLKLSFPEY SGIIRLSLIL ICIYIFSFVD TSRIYHYIRA QPFMKLYVVL NMLEILERLL 840
  841 RSLGKDLIDN MIRTFIRIIN LRSYICIIRN NYNEKSSINS NSNYINYVHN DNYGVNSYIY 900
  901 KNKDNNNELI TFDNTRHINV FTNKNKDNLL NNNNNNMNYM NYMYKDSVIK NKHEYENGYV 960
  961 TNMDKDIFSN NFYMNNIRHH ADSFYYQNEL NSFNLNKNKE NNVRFFNNEN DKKKNNKSKI1020
 1021 SILFPFYSVV LKFTIQYIFV LAYILIHAFM HLVRFLSLNI AINSSEVPQK ILICCTCSTM1080
 1081 FLILVMSNFT EIKSTVFKKF TKISLFTIVA SDAVERFYLF IDAFLVLLKM STAYRTQNSF1140
 1141 FSISSWLIII LLLEVGVDWC KHSYLLKYNK LDSESLNKYF HLFFLPARSS DVLISRTPNK1200
 1201 NIYYMKDSFA VPCKNIFSFS HIPTRYLFFL FGLFFIYLLH VFEFRRLGYM SMPVVTLIVC1260
 1261 SLPRLNYLSN ISLFSFALSI WICLFLFKII LSIMIVSYTI SEKKQLKNLK KPYDDISAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle