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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|124504959, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAFVLIFS CFLLFLPLHI VRTHYAKNEE TNKKDTKLKK KRNVKTFNKK LTNKSFLQVQ  60
   61 HTVATRSVPP PPCLGDDCFC QNYYDLTLIL DESASIGSKN WKNHVIPFTD KIIKDLTISK 120
  121 NEVHVGILLF SSKNRDYVTY GDELRYQKDE LLKKVEKLKK DYYCGGGTKI LGALKYSLEN 180
  181 YTKHKNIRYD APKVTILFTD GNENSASNKQ LLEMGLTYRR ERVKLLVLGV AAAEDNKLKL 240
  241 IAGCEENTNC PYSMKAEWET INDITKRLTN KICHTESEIE PEPKPEPSTP THCQGDDCFC 300
  301 EDYYDLTLIL DESRSITLDK WKKDVVPFAE KVLNNLNIDK DKIHVGIMRF AKSMKTDIGY 360
  361 EQETRYMKND LIKLVRELKD KYGYGGATHL VDALQYSLKT FTRHPNNRVD APKVTILFTD 420
  421 GNETSKKEKD IRDVGLLYRK ENVKLIVVGV NLATEKSLKL LAGCTENEEC LRVIKCEWND 480
  481 LTNITKILTD KICNTGSVEL PKPEENPEPV EKPNPEENPN PVEKPTPEEN PNPVEKPTPE 540
  541 ENPNPVEKPE PEKNPCINME DCYCKDFYDI TLVLDESASI SDLIWRNEVI PFSLEIIKRI 600
  601 NISYKNVHMG VLLFSEYTRD IVRFYDNARY EKGTLQTKIN DLKRDYRSGK KTYIIQALQY 660
  661 ALTYYSKLSN RKEAPKVTML FTDGNDSYES EKGLQDIALL YRKENVKLLV VGVSTASENK 720
  721 LKMLVGCAPN VVCPFVIKTE WGLLKNVSEV FVKKICDNGV VLPPGSPSES TPGSPSESTP 780
  781 GSPSESTPGS PSESTPGNPS ESTPGSPSES TPGNPSESTP GSPSESTPGS PSESTPCSGT 840
  841 ECLCHNTYDL TLIIDESASI GYSNWEKEVV PFTIGLASNL EISEKKVNMG ILLFSDKIRE 900
  901 FIKYGQKESY DKNNLVRRIH DLKKYYKSGG FSYIVEALKY GLYSYAKSTS SRLNVPKVNI 960
  961 LLTDGNNTDT SDFILTEVSS LYKKENVKLL LIGIGGPTIH KLRLLGGCDK SDGDCPYVVK1020
 1021 AEWNNLKYTS NLIIDKICHT DKPVENPGDN SSVCNSKDDC ICANYFDLTY IEVPTLNSTY1080
 1081 TWRSDFMDCS KNIMNSLVID KNKVHVSLII SLEKKSVHQG FDDVNSYNKN ELIKTLGKLE1140
 1141 NSTVLNKTNI LDSLVYGIQQ SFGKGNRENA PKVTMLLTNS NSDISDEKAL QDIYLNYKEK1200
 1201 SIKLLIIGIG ITNTGKLFNA GGCNMNGDNC PHVYASKSFS YIGGVDTFLE VNKCDSSIDN1260
 1261 NGGDNGNGTE GNVNPDTPSC NDNDDDDKCN NDDSNIICTK VLDIAVVLDQ SSNISKDQWN1320
 1321 VYIKQFVINT VNQNYLSKYR SHITIVKMGK STKEKWSLNK KISYQKKKII KEINKLPISY1380
 1381 SKKKDIAKSL KYVRTKVFKK SETNRKKLII MLVEGKSNSN MNDLRKEVGL LKVNNIDFFA1440
 1441 YAIDNIDETE YKILGDCEGS VDMGLMGNSP PSPSYLPCKN IVKVSWDTLL SSTDIHMKYI1500
 1501 CNGYPEDAEC SEWEEWSPCP ETCPTINNNN NNSSGSNNSS RTNIRTYFPQ LSKRERKGPY1560
 1561 TLKGEEYMGE KYGSSCMELK SIEYRSCPIN AGCNDMCGDF GEWSECSATC GEGIRVRNRD1620
 1621 NSLDNDDKCK LFNSTEMEAC NIQECDDNNN VDICEDIGEW SDWSSCSKTC GYSTRSRTFT1680
 1681 ILPEYIGEYP NCKIFERSET EVCAFIPACS DENCFEWEEW NEWSSPCSPR KRVQKARVLK1740
 1741 KDDVIISSGD NNNNNNNNAK RGMGHKNSTF TSYNNKKSDI CEEEVRHYLD KVEYDEESTC1800
 1801 ENKNPCGDWS DWSECDRTCN VGVRIRHFIS HMFDMVGDED EKECLEYYNK VETQDCLHLP1860
 1861 PCDGGECSDW ETWVECKEED MIGNNCHKRN KKILTRKLEL LKNKDITRTK NTSDVCNDYT1920
 1921 LFREEDCPQS NDTCINALCN EWEEWGDCSS TCGEGSFKIR KRKEPLELIP ASQDINGNIG1980
 1981 LTCAQQNIKV EEREACIVPA CEDESTNGGT EVEGSTPSSP SDSNNNDGSS GDNTGDSNDK2040
 2041 KGMGTGEKVS LAAGVIGLVA LAAGGLIYGY NTLNGGEPPH SSNMEFENVE NNSGTEEEEN2100
 2101 EDFEVVDADD PMWN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle